Search results

[question] Request to update mlst to v2.25

questionFurther information is requestedFurther information is requested

Status: Open.

#642 In bactopia/bactopia;

· svermai opened on Dec 23, 2025

R1 R2 error correction

Status: Open.

#641 In bactopia/bactopia;

· fconstancias opened on Dec 9, 2025

Incompatible Python versions

bugSomething isn't workingSomething isn't working

Status: Open.

#640 In bactopia/bactopia;

· AntonS-bio opened on Dec 2, 2025

[bug] Subsequent runs of Abricate do not overwrite the individual outputs under tools -> abricate

bugSomething isn't workingSomething isn't working

v4

Status: Open.

#639 In bactopia/bactopia;

· rwilliams opened on Nov 22, 2025

[bug] Bakta issue, please update bakta

bugSomething isn't workingSomething isn't working

Status: Open.

#636 In bactopia/bactopia;

· SchwarzMarek opened on Nov 10, 2025

[question] Preassembled genome with reads

questionFurther information is requestedFurther information is requested

Status: Open.

#635 In bactopia/bactopia;

· SchwarzMarek opened on Oct 27, 2025

[question] Using Bactopia on HPC with SLURM workload management

questionFurther information is requestedFurther information is requested

Status: Open.

#634 In bactopia/bactopia;

· michaelgruenstaeudl opened on Oct 22, 2025

Using files contained in subdirectories

enhancementNew feature or requestNew feature or request

Status: Open.

#633 In bactopia/bactopia;

· AntonS-bio opened on Oct 21, 2025

[bug]Pangenome workflow with Panaroo passing unfiltered core alignment to snpdists, causing "mistakes" in snpdists.

bugSomething isn't workingSomething isn't working

fixed

v4

Status: Open.

#632 In bactopia/bactopia;

· Tierex1 opened on Oct 10, 2025

copy number estimation tools

add-bactopia-tool

v4

Status: Open.

#629 In bactopia/bactopia;

· riccabolla opened on Aug 29, 2025

Bactopia v4 - Overview & Help Wanted

v4

Status: Open.

#628 In bactopia/bactopia;

· rpetit3 opened on Aug 5, 2025

[enhancement] - Update workflows for Nextflow Strict syntax

done

v4

Status: Open.

#627 In bactopia/bactopia;

· rpetit3 opened on Aug 5, 2025