sbmlutils is a collection of python utilities for working with SBML models implemented on top of libsbml with source code available from https://github.com/matthiaskoenig/sbmlutils.

Features include among others

• helper functions for model creation, manipulation, and annotation
• HTML reports of SBML models https://sbml4humans.de.
• file converters (XPP)

If you have any questions or issues please open an issue.

• Source Code: MIT
• Documentation: CC BY-SA 4.0

sbmlutils is available from pypi and can be installed via

pip install sbmlutils

The latest develop version can be installed via

pip install git+https://github.com/matthiaskoenig/sbmlutils.git@develop

Matthias König is supported and by the German Research Foundation (DFG) within the Research Unit Programme FOR 5151 "QuaLiPerF (Quantifying Liver Perfusion-Function Relationship in Complex Resection - A Systems Medicine Approach)" by grant number 436883643 and by grant number 465194077 (Priority Programme SPP 2311, Subproject SimLivA).

Matthias König was supported by the Federal Ministry of Education and Research (BMBF, Germany) within the research network Systems Medicine of the Liver (LiSyM, grant number 031L0054). SBML4Humans was funded as part of Google Summer of Code 2021. Matthias König has received funding from the EOSCsecretariat.eu which has received funding from the European Union's Horizon Programme call H2020-INFRAEOSC-05-2018-2019, grant Agreement number 831644.

© 2017-2025 Matthias König