Open source tools for computational pathology - Nature BME

QuPath - Open-source bioimage analysis for research

Pathology Foundation Model - Nature Medicine

Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

Vision-Language Pathology Foundation Model - Nature Medicine

Tools for computational pathology

Integrating histology and spatial transcriptomics - NeurIPS 2024

Tools for tissue image stain normalisation and augmentation in Python 3

Powerful, open-source AI tools for digital pathology.

Multimodal Whole Slide Foundation Model for Pathology

Stain normalization tools for histological analysis and computational pathology

List of pathology feature extractors and foundation models

Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀

Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024

Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)

⚡ Open-source software for deep learning-based digital pathology

Attention-Challenging Multiple Instance Learning for Whole Slide Image Classification (ECCV2024)

Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023

A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.